rs11130100 chr3:46637708 T>A
- Sequence
gatgcatgatgccccctatatgcc[T/A]atctcagtattccgggaccacagg
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.06 | 1.30 | 1.00 | 1.35 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, biploar disorder (bipolar schizoaffective disorder), childhood acute lymphoblastic leukemia, parkinsons disease, simpson-angus scale
GTEx eQTL Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Testis, Thyroid