rs11132303 chr4:185425919 G>C
- Sequence
gctgacgcctgcccaaaagttccg[G/C]gggccggccctgaagtggtgtcac
- ASB in cell types
- keratinocytes primary B-CLL cells LNCaP (prostate carcinoma) adult erythroblasts
- ASB for transcription factors
- SNAI2_HUMAN CREB1_HUMAN RBBP5_HUMAN BRD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | n/a | 3.32 | 1.50 | n/a | No Hit | |||
| CREB1_HUMAN | 2.09 | -0.41 | 1.50 | n/a | No Hit | |||
| RBBP5_HUMAN | n/a | 3.90 | 2.00 | n/a | n/a | |||
| BRD4_HUMAN | -0.08 | 2.98 | 1.55 | n/a | n/a | |||
| KMT2C_HUMAN | 2.67 | -2.54 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus