rs11136538 chr8:2733874 G>C

Sequence
gtcagtcagtgcgcatgcgtggcc[G/C]ggtatcggacaggaactgcaccag
ASB in cell types
K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
SPI1_HUMAN MTG8R_HUMAN MTG16_HUMAN SPT5H_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN -0.40 3.04 1.003.8·10-7 1.80 n/a No Hit
MTG8R_HUMAN n/a 1.18 1.001.7·10-3 2.00 n/a n/a
MTG16_HUMAN n/a 0.50 1.000.02 2.00 n/a n/a
SPT5H_HUMAN -1.74 2.67 1.000.03 2.00 n/a n/a
GATA1_HUMAN 0.32 1.98 0.970.03 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  ldl cholesterol,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Brain_Hippocampus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Prostate,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid

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