rs11137098 chr8:7355238 C>T
- Sequence
gcctcttcaaagcccctaccggaa[C/T]ctccccggaggccccagcctcaaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) LNCaP C4-2B (prostate carcinoma) foreskin keratinocyte hNSC (neural stem cells)
- ASB for transcription factors
- CTCF_HUMAN CHD8_HUMAN RAD21_HUMAN ZN770_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.64 | 0.79 | 1.37 | n/a | No Hit | |||
| CHD8_HUMAN | -3.13 | 3.48 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 2.41 | 0.37 | 1.20 | n/a | n/a | |||
| ZN770_HUMAN | 1.81 | 0.08 | 2.00 | -2.33 | Concordant | |||
| LMBL2_HUMAN | -2.09 | 2.49 | 1.00 | n/a | n/a |
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Motif analysis
