rs11138261 chr9:79489919 A>G
- Sequence
gcaaattgtgctgggatgatttga[A/G]aaccaaacaaaccaaaaggacatg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) breast tumor primary prostate cancer
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN GATA3_HUMAN TLE3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.26 | 0.17 | 1.79 | -1.72 | Weak Concordant | |||
| ESR1_HUMAN | 1.07 | 0.17 | 1.81 | n/a | No Hit | |||
| GATA3_HUMAN | 2.31 | 0.33 | 2.33 | n/a | No Hit | |||
| TLE3_HUMAN | 2.15 | -3.45 | 2.00 | n/a | n/a |
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Motif analysis
