rs11139289 chr9:69549621 A>G
- Sequence
ggcctgtaggtgacctctcgtggt[A/G]aaagagggtaactgcacagtgaag
- ASB in cell types
- GBM39 (Human brain tumor) HMEC (human mammary epithelial cells) foreskin keratinocyte GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.40 | 1.03 | 1.35 | 0.09 | Weak Concordant | |||
| STAG1_HUMAN | -0.06 | 0.63 | 1.02 | n/a | n/a | |||
| SMC3_HUMAN | 0.66 | 1.81 | 1.56 | n/a | n/a |
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Motif analysis
