rs11143237 chr9:72293107 A>G
- Sequence
ccatattctcaaaggccacaagta[A/G]gagtgcattgcatagccttacatt
- ASB in cell types
- Peyer's patch CD14+ monocytes GM19238 (female B-cells lymphoblastoid cell lines) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.01 | 1.92 | 1.19 | n/a | No Hit | |||
| STAT1_HUMAN | 1.65 | -0.81 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), college completion, cystatin c in serum, ldl cholesterol change with statins, salmonella-induced pyroptosis, total cholesterol change with statins, years of education
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid