rs11146002 chr9:137118844 A>C
- Sequence
agagtgcgagccttctgttatgcc[A/C]ggacagggccaccagagggctcct
- ASB in cell types
- HCT-116 (colon carcinoma) Peyer's patch SYO-1(Biphasic synovial sarcoma) RH4 (alveolar rhabdomyosarcoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN TBX21_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.56 | 0.33 | 1.43 | n/a | No Hit | |||
| RAD21_HUMAN | 3.05 | 0.10 | 1.85 | n/a | n/a | |||
| STAG1_HUMAN | 0.90 | -0.49 | 1.07 | n/a | n/a | |||
| TBX21_HUMAN | 1.70 | -0.58 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood