rs11149742 chr16:85416494 G>C
- Sequence
tgctttctgcccagctccttcccg[G/C]aaggaggtgcagcccctgccacgt
- ASB in cell types
- K562 (myelogenous leukemia) SEM (childhood B acute lymphoblastic leukemia) THP-1 (acute monocytic leukemia) erythroid progenitors
- ASB for transcription factors
- ERG_HUMAN MNT_HUMAN EP400_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ERG_HUMAN | 2.39 | n/a | 1.33 | -2.68 | Concordant | |||
| MNT_HUMAN | 1.42 | -3.29 | 2.75 | n/a | No Hit | |||
| EP400_HUMAN | 1.61 | n/a | 3.00 | n/a | n/a | |||
| HDAC1_HUMAN | 2.37 | -0.58 | 3.25 | n/a | n/a | |||
| ZN592_HUMAN | 2.78 | n/a | 3.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP diastolic blood pressure (dbp), hdl cholesterol, systolic blood pressure (sbp), urinary albumin-to-creatinine ratio