rs11150039 chr16:78050965 T>C

Sequence
gagtcataaatgtctctttacaaa[T/C]gccaacggcctaggcagatatttt
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) MCF7 WS8 cells
ASB for transcription factors
FOXA1_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.32 1.02 1.007.2·10-6 2.11 n/a No Hit
ESR1_HUMAN 0.72 1.01 1.000.03 2.68 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cerebellum,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Esophagus_Gastroesophageal_Junction,  Prostate,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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