rs11150639 chr16:31701366 T>G
- Sequence
ttttcttttcctttaagttatttc[T/G]aagaaatgcatgagttacgttttg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CFPAC-1(pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- ZNF24_HUMAN COT1_HUMAN ELF1_HUMAN FOXA2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZNF24_HUMAN | n/a | 3.91 | 1.00 | 3.50 | Concordant | |||
| COT1_HUMAN | -1.70 | 1.70 | 1.00 | n/a | No Hit | |||
| ELF1_HUMAN | -0.65 | 2.43 | 1.17 | n/a | No Hit | |||
| FOXA2_HUMAN | 1.84 | -0.17 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood