rs11151632 chr18:71036973 C>T
- Sequence
tatgtaagtactaaaagggacttt[C/T]tggaggctttggcttaaaacagtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- RELB_HUMAN IKZF2_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RELB_HUMAN | 2.14 | -0.49 | 1.25 | -3.27 | Concordant | |||
| IKZF2_HUMAN | 1.55 | -1.02 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 1.84 | -1.52 | 1.25 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP adiponectin levels, fasting blood glucose, paternal transmission distortion, salmonella-induced pyroptosis, schizophrenia, spine bone mineral density (bmd), total cholesterol, transmission distortion