rs11156009 chr6:155076239 T>C

Sequence
aggtgggagtgggtggagcatttg[T/C]tcagggacctgacatctcggctca
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
COT1_HUMAN IKZF2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
COT1_HUMAN -2.41 2.72 1.003.3·10-3 1.00 n/a No Hit
IKZF2_HUMAN -0.34 1.62 1.000.02 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol parkinsons disease

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