rs11159149 chr14:75648569 T>C

Sequence
ttctctgattacctcagccatgca[T/C]cagcttgctgtggctggggcccat
ASB in cell types
HUVEC-C (HUVEC, umbilical vein endothelial cells) HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
TF65_HUMAN NOTC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN n/a 2.94 1.007.8·10-4 3.00 n/a No Hit
NOTC1_HUMAN n/a 2.25 1.000.05 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  height,  prop taste detection threshold,  urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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