rs11159798 chr14:86961298 T>C
- Sequence
ataactaatacctagttcctccgc[T/C]aggggactacgagccccagtaacc
- ASB in cell types
- pancreas 22RV1 (prostate carcinoma) GM12890 (Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.59 | 0.43 | 1.26 | 0.17 | Weak Discordant | |||
| SMC3_HUMAN | -0.30 | 2.51 | 2.00 | n/a | n/a |
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Motif analysis
