rs11161545 chr1:85201703 C>T
- Sequence
gaggcggcggcggctccccatgac[C/T]ggcgctggccctcgccggctcctc
- ASB in cell types
- 22RV1 (prostate carcinoma) SYO-1(Biphasic synovial sarcoma)
- ASB for transcription factors
- ANDR_HUMAN SSXT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.30 | n/a | 2.00 | n/a | No Hit | |||
| SSXT_HUMAN | 1.77 | -1.70 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Esophagus_Muscularis, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg