rs11164897 chr1:93304815 C>G
- Sequence
tccacatgcaggaaatctaaacag[C/G]cactagagggtgccagtcacataa
- ASB in cell types
- K562 (myelogenous leukemia) GM10847 (female B-cells Lymphoblastoid Cell Lines) 2588 (Lymphoblastoid Cell Lines) GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.23 | 0.48 | 1.36 | -5.05 | Concordant | |||
| STAG1_HUMAN | 0.67 | 0.95 | 1.06 | n/a | n/a |
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Motif analysis
