rs11166986 chr8:140646056 G>A
- Sequence
gaactcgcatgctgctctcctacc[G/A]acagtcctgggtgagaacccacag
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) Kasumi-1 (acute myeloblastic leukemia) AML (monocytes and acute myeloid leukemia) ICN12 (primary pre-B acute lymphomablastic leukemia)
- ASB for transcription factors
- TF65_HUMAN LDB1_HUMAN MYB_HUMAN EP300_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 2.40 | -0.33 | 2.00 | n/a | No Hit | |||
| LDB1_HUMAN | n/a | 2.35 | 2.00 | n/a | n/a | |||
| MYB_HUMAN | -0.54 | 2.48 | 2.00 | 4.85 | Concordant | |||
| EP300_HUMAN | 0.33 | 1.68 | 1.33 | n/a | n/a | |||
| PBX1_HUMAN | -2.19 | 1.47 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP diastolic blood pressure (dbp), ldl cholesterol change with statins, lp-pla2 activity, parkinsons disease, serum creatinine, systolic blood pressure (sbp), type 1 diabetes, combined control dataset, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Nerve_Tibial, Testis