rs11167821 chr5:143595079 A>G

Sequence
ctggctgacccagctactttagag[A/G]tcaatagtgatctcccatctgctc
ASB in cell types
A549 (lung carcinoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
GCR_HUMAN EP300_HUMAN RAD21_HUMAN JUN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN -0.21 2.10 1.003.1·10-8 2.14 n/a No Hit
EP300_HUMAN 0.20 2.31 1.009.9·10-8 2.00 n/a n/a
RAD21_HUMAN 0.26 1.66 0.973.1·10-5 1.96 n/a n/a
JUN_HUMAN 0.27 1.91 1.005.3·10-5 2.00 n/a No Hit
SMC3_HUMAN -0.26 2.04 1.001.5·10-4 2.00 n/a n/a
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Motif analysis

NR2F6_HUMAN Concordant
NR2F6_HUMAN pic

Genetic associations

GRASP asthma,  behets disease,  hdl cholesterol,  hdl cholesterol change with statins,  rheumatoid arthritis,  tetrology of fallot,  urinary albumin-to-creatinine ratio
GTEx eQTL Esophagus_Mucosa

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