rs11168 chr6:166342491 A>C
- Sequence
ccgcagcttctccatggccctgtt[A/C]cagggccgtagcggccgccactct
- ASB in cell types
- BEAS-2B (bronchial epithelium) HepG2 (hepatoblastoma)
- ASB for transcription factors
- GCR_HUMAN TYY1_HUMAN RFOX2_HUMAN NELFE_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.32 | 0.47 | 1.00 | 4.12 | Discordant | |||
| TYY1_HUMAN | 3.00 | n/a | 3.00 | n/a | No Hit | |||
| RFOX2_HUMAN | 1.56 | -1.54 | 1.17 | n/a | n/a | |||
| NELFE_HUMAN | -2.70 | 1.34 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Uterus, Whole_Blood