rs111685461 chr17:41009446 G>A
- Sequence
tcggtatgccaggcatctgcaaac[G/A]tttcccacttcttttgtttacttt
- ASB in cell types
- HepG2 (hepatoblastoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- TBX3_HUMAN FOXP1_HUMAN MIXL1_HUMAN SOX13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX3_HUMAN | n/a | 1.53 | 2.00 | n/a | No Hit | |||
| FOXP1_HUMAN | n/a | 3.40 | 2.00 | 3.51 | Concordant | |||
| MIXL1_HUMAN | n/a | 3.56 | 2.00 | n/a | No Hit | |||
| SOX13_HUMAN | -1.54 | 1.92 | 2.00 | n/a | No Hit | |||
| HM20A_HUMAN | n/a | 3.35 | 2.00 | n/a | n/a |
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Motif analysis
