rs11168699 chr12:48716440 C>A

Sequence
cttcttccccactttcgtcccccc[C/A]acagagcctgagacccggacgcca
ASB in cell types
K562 (myelogenous leukemia) HCT-116 (colon carcinoma)
ASB for transcription factors
RFOX2_HUMAN MBD4_HUMAN MGAP_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RFOX2_HUMAN 2.89 -5.14 9.0·10-51.00 2.00 n/a n/a
MBD4_HUMAN 0.89 1.94 1.000.01 1.00 n/a n/a
MGAP_HUMAN 2.40 n/a 0.021.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hippocampus,  Breast_Mammary_Tissue,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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