rs11168700 chr12:48716442 C>A

Sequence
tcttccccactttcgtccccccca[C/A]agagcctgagacccggacgccaga
ASB in cell types
K562 (myelogenous leukemia) HCT-116 (colon carcinoma)
ASB for transcription factors
RFOX2_HUMAN MGAP_HUMAN MBD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RFOX2_HUMAN 3.02 -5.44 6.7·10-51.00 2.00 n/a n/a
MGAP_HUMAN 2.46 n/a 0.011.00 2.00 n/a No Hit
MBD4_HUMAN 0.87 1.91 1.000.02 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hippocampus,  Breast_Mammary_Tissue,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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