rs11169667 chr12:51009305 G>A

Sequence
acggggtactggcaccctcgtgat[G/A]gcagggctcatctcagactgatat
ASB in cell types
CD34+ hematopoietic stem cells-derived proerythroblasts 22RV1 (prostate carcinoma)
ASB for transcription factors
GATA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GATA1_HUMAN 2.21 -1.47 2.3·10-31.00 2.00 3.09 Discordant
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Motif analysis

GATA1_HUMAN Discordant
GATA1_HUMAN pic

Genetic associations

GRASP height,  ldl cholesterol,  refractive error,  total cholesterol
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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