rs11170049 chr12:52222263 A>G
- Sequence
ttcgaggcgttgctttctgtgggc[A/G]tcccatctgcttgctgttcttgtg
- ASB in cell types
- K562 (myelogenous leukemia) BEAS-2B (bronchial epithelium) HeLa (cervical adenocarcinoma) foreskin keratinocyte
- ASB for transcription factors
- GCR_HUMAN RAD21_HUMAN ZN316_HUMAN RING2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.27 | 1.47 | 1.00 | n/a | No Hit | |||
| RAD21_HUMAN | 1.65 | 0.28 | 1.75 | n/a | n/a | |||
| ZN316_HUMAN | -5.08 | 3.00 | 2.00 | 0.23 | Weak Concordant | |||
| RING2_HUMAN | n/a | 2.55 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis