rs11170050 chr12:52222288 G>C
- Sequence
tcccatctgcttgctgttcttgtg[G/C]gcagtgcgtcttcaccctgccatc
- ASB in cell types
- BEAS-2B (bronchial epithelium) K562 (myelogenous leukemia) LNCaP (prostate carcinoma) GM18505 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- GCR_HUMAN ETS1_HUMAN ZN316_HUMAN RING2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.02 | 1.54 | 1.00 | n/a | No Hit | |||
| ETS1_HUMAN | 1.86 | -1.51 | 1.00 | n/a | No Hit | |||
| ZN316_HUMAN | -1.72 | 2.77 | 2.00 | 3.42 | Concordant | |||
| RING2_HUMAN | -4.88 | 2.79 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 2.12 | 0.24 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis