rs11170080 chr12:52298689 G>A
- Sequence
catagaggctaagtaattgcctga[G/A]tttacacagctagagagtggcaga
- ASB in cell types
- 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.68 | 0.09 | 1.40 | -0.94 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP age at death with kuru exposure, autism, autism with verbal ability, sporadic creutzfeldt-jakob disease, waist hip ratio
GTEx eQTL Brain_Amygdala, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Minor_Salivary_Gland, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Thyroid