rs11171710 chr12:55974294 G>A

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
VEZF1_HUMAN 2.23 -1.16 5.9·10-31.00 2.00 -1.49 Weak Concordant
ARI1A_HUMAN -1.47 2.11 1.009.5·10-3 1.17 n/a No Hit
CTCF_HUMAN 0.34 0.97 0.980.02 1.16 2.51 Concordant
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Motif analysis

VEZF1_HUMAN Weak Concordant
VEZF1_HUMAN pic

Genetic associations

EMBL-EBI medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)
GRASP adiponectin levels,  alopecia areata,  aortic valve calcium,  college completion,  diastolic blood pressure (dbp),  fasting blood glucose,  fasting insulin,  hdl cholesterol,  homa-ir,  maternal transmission distortion,  parkinsons disease,  rheumatoid arthritis,  systolic blood pressure (sbp),  triglycerides,  type 1 diabetes,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Brain_Substantia_nigra,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Kidney_Cortex,  Liver,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Uterus,  Vagina,  Whole_Blood

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