rs11177489 chr12:69101706 G>C
- Sequence
agccaatcagaacaacagctacca[G/C]tggaagcggtccagttaaaacaaa
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN RFX1_HUMAN BCL6_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.40 | 1.64 | 1.60 | n/a | No Hit | |||
| ESR1_HUMAN | 0.53 | 1.62 | 1.80 | n/a | No Hit | |||
| RFX1_HUMAN | -1.38 | 2.52 | 1.83 | n/a | No Hit | |||
| BCL6_HUMAN | n/a | 3.29 | 1.50 | n/a | No Hit | |||
| NFIB_HUMAN | n/a | 3.22 | 1.75 | 1.83 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, bipolar disorder in alcoholics, simpson-angus scale