rs11177583 chr12:69291251 C>G

Sequence
cgccacagtattgcaggggaactt[C/G]tgattagaaaccctgcaaacctct
ASB in cell types
neutrophils from periferal blood MCF7 (Invasive ductal breast carcinoma) CD14+ monocytes
ASB for transcription factors
STAT1_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.01 -1.06 5.2·10-31.00 2.00 n/a No Hit
RAD21_HUMAN 1.65 0.55 0.040.58 1.45 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi),  infant head circumference,  parkinsons disease
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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