rs11177764 chr12:69649725 C>T

Sequence
tttctggcctctacccactagatg[C/T]cagaaatactccccagcctgacaa
ASB in cell types
VCaP (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN n/a 3.29 1.008.0·10-5 1.00 0.04 Weak Concordant
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GRASP adiponectin levels,  parkinsons disease,  paternal transmission distortion,  transmission distortion,  triglycerides
GTEx eQTL Artery_Tibial,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Pituitary,  Testis

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