rs11203380 chr1:16904867 C>T
- Sequence
agggacaggcggacgtcacttccc[C/T]cgccggctgcggcaccgggttggt
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) transverse colon HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RBM25_HUMAN ZBT11_HUMAN MBD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.59 | 0.45 | 1.71 | n/a | No Hit | |||
| RBM25_HUMAN | 1.60 | -2.94 | 2.00 | n/a | n/a | |||
| ZBT11_HUMAN | 2.08 | n/a | 2.00 | n/a | n/a | |||
| MBD4_HUMAN | 1.36 | 0.15 | 1.39 | n/a | n/a | |||
| PKNX1_HUMAN | 2.06 | n/a | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 17
Motif analysis
