rs11204998 chr1:152393179 A>C
- Sequence
tgagataaacaacgccctttgtta[A/C]gtgaaggtgtgactgaatttttta
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) MCF7 WS8 cells
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN GATA3_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.13 | 1.44 | 2.19 | n/a | No Hit | |||
| ESR1_HUMAN | 0.08 | 1.23 | 2.25 | n/a | No Hit | |||
| GATA3_HUMAN | -0.87 | 1.01 | 2.17 | n/a | No Hit | |||
| CREB1_HUMAN | -4.33 | 2.29 | 2.25 | n/a | No Hit | |||
| GRHL2_HUMAN | 0.04 | 1.63 | 2.22 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP barnes akathisia rating scale, hdl cholesterol, parkinsons disease, total cholesterol, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid