rs11220140 chr11:125592740 C>T
- Sequence
aaacttgaatcgcggcccggttta[C/T]gcctccggatttgacagacagttc
- ASB in cell types
- WA01 (H1, human embryonic stem cells) neural cell adult erythroblasts 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CHD2_HUMAN NC2A_HUMAN RBBP5_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CHD2_HUMAN | 2.90 | n/a | 1.00 | n/a | n/a | |||
| NC2A_HUMAN | -2.51 | 2.86 | 1.00 | n/a | n/a | |||
| RBBP5_HUMAN | 2.49 | n/a | 2.50 | n/a | n/a | |||
| ANDR_HUMAN | 2.54 | n/a | 2.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid