rs11234564 chr11:86158902 G>C

Sequence
agtcgaggaaggcttcctggaaga[G/C]gtgggacttaagctaggctttcct
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
DDX20_HUMAN MNT_HUMAN BCOR_HUMAN ARNT_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
DDX20_HUMAN 3.07 n/a 3.6·10-61.00 2.00 n/a n/a
MNT_HUMAN 2.78 -0.47 3.5·10-50.95 2.00 3.60 Discordant
BCOR_HUMAN 2.44 n/a 1.5·10-31.00 2.00 n/a n/a
ARNT_HUMAN 1.89 -0.28 0.021.00 2.00 n/a No Hit
SMCA4_HUMAN 1.76 -2.84 0.021.00 2.00 n/a n/a
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Motif analysis

MNT_HUMAN Discordant
MNT_HUMAN pic

Genetic associations

GRASP obesity with early age of onset (age >2),  parkinsons disease,  rheumatoid arthritis,  years of education
GTEx eQTL Artery_Tibial

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