rs112984305 chr2:101252764 C>T

Sequence
cctgccaattcgccccgcctaccc[C/T]gcgtctccgcatcctcttcctggc
ASB in cell types
22RV1 (prostate carcinoma) adult erythroblasts naive IgD+ B cells
ASB for transcription factors
RBBP5_HUMAN ANDR_HUMAN FOXP1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBBP5_HUMAN 3.23 n/a 2.8·10-41.00 2.00 n/a n/a
ANDR_HUMAN 2.71 -0.04 6.8·10-40.96 1.75 n/a No Hit
FOXP1_HUMAN 1.88 0.39 0.040.92 1.67 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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