rs112992946 chr14:87993123 C>G

Sequence
acccgcggccgcagtcatagcttt[C/G]gctcggcgttgccaggaagccgag
ASB in cell types
CD14+ monocytes 22RV1 (prostate carcinoma) breast tumor lymphoblastoid cells
ASB for transcription factors
STAT1_HUMAN TYY1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 3.42 n/a 8.3·10-51.00 2.00 n/a No Hit
TYY1_HUMAN 1.48 -0.61 6.0·10-41.00 1.36 n/a No Hit
ANDR_HUMAN 2.72 -0.27 4.4·10-30.96 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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