rs113103003 chr3:125742906 A>C
- Sequence
ctcttcaagtgcatggagcatgat[A/C]gaaaagggcctactgaactctggg
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) GM12890 (Lymphoblastoid Cell Lines) MM1.S (plasma cell myeloma) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.95 | -0.73 | 2.81 | n/a | No Hit | |||
| STAG1_HUMAN | 2.55 | n/a | 4.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Colon_Sigmoid, Colon_Transverse, Muscle_Skeletal, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid