rs113146279 chr10:38526894 C>T
- Sequence
gaatggtgtggaatggaagggatt[C/T]gaatggaatggagtggattggact
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN NFIC_HUMAN CENPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.34 | 0.03 | 2.67 | n/a | No Hit | |||
| STAT1_HUMAN | 2.77 | -5.29 | 2.00 | 3.04 | Discordant | |||
| NFIC_HUMAN | 3.03 | -5.36 | 2.00 | n/a | No Hit | |||
| CENPA_HUMAN | 1.12 | -0.22 | 3.00 | n/a | n/a | |||
| ANDR_HUMAN | 1.58 | -0.20 | 2.67 | n/a | No Hit |
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Motif analysis
