rs113169612 chr4:119454427 C>A
- Sequence
ctcttggcctgaagggtcctcccg[C/A]ctcggcggcgccagacatagtttt
- ASB in cell types
- thoracic aorta gastroesophageal sphincter esophagus muscularis mucosa GM02255 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.53 | 2.30 | 1.48 | 1.88 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Brain_Hippocampus, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid