rs113170630 chr17:8200651 G>A
- Sequence
gcagtgagccgagattgtgccacg[G/A]cactgcagcctgggcgacagagcg
- ASB in cell types
- HEK293 (embryonic kidney) MCF10A (breast epithelial cells)
- ASB for transcription factors
- ZN121_HUMAN SP7_HUMAN ZBT17_HUMAN PRDM1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN121_HUMAN | 3.72 | n/a | 2.00 | n/a | No Hit | |||
| SP7_HUMAN | 2.86 | n/a | 1.50 | n/a | No Hit | |||
| ZBT17_HUMAN | 2.72 | -4.94 | 2.00 | n/a | No Hit | |||
| PRDM1_HUMAN | 2.84 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood