rs113207154 chr8:11802659 G>C

Sequence
acgaggccgcagctagccccgctg[G/C]cggccgaggccggttgaagtgggc
ASB in cell types
primary B-CLL cells CD14+ monocytes
ASB for transcription factors
STAT1_HUMAN BRD4_HUMAN LMBL2_HUMAN BC11B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.27 -1.82 2.8·10-31.00 2.00 n/a No Hit
BRD4_HUMAN 2.49 0.47 8.2·10-30.68 1.80 n/a n/a
LMBL2_HUMAN 1.88 -1.67 0.011.00 1.00 n/a n/a
BC11B_HUMAN 1.77 0.43 0.031.00 2.00 n/a n/a
Items per page:
1 – 4 of 4

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

Download