rs113268519 chr3:46846019 A>G
- Sequence
gagcctgcagcccccgcctccagg[A/G]gatctgcggaggcctcccctgcag
- ASB in cell types
- 22RV1 (prostate carcinoma) GM02610 (Lymphoblastoid Cell Lines) primary B-CLL cells esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.82 | 0.28 | 1.17 | n/a | No Hit | |||
| STAG1_HUMAN | 0.75 | 0.18 | 1.09 | n/a | n/a | |||
| ANDR_HUMAN | 2.11 | -0.97 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Esophagus_Gastroesophageal_Junction, Heart_Left_Ventricle, Muscle_Skeletal, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid