rs113272282 chr5:95620915 G>C
- Sequence
ccggccgcccgcgcctggccgggg[G/C]agcgtcgctgccacgggatcttcg
- ASB in cell types
- VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN MBL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.08 | 1.33 | 1.60 | n/a | No Hit | |||
| MBL2_HUMAN | n/a | 3.09 | 4.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood