rs113277671 chr14:23057519 C>T
- Sequence
gggcgccgcggctccgctgcaggt[C/T]tgagcggccccggcgagaacaagg
- ASB in cell types
- MS-1 (Small cell lung carcinoma) 22RV1 (prostate carcinoma) breast tumor BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- ANDR_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.71 | -1.91 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.35 | -1.58 | 2.00 | -2.80 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Brain_Cortex, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid