rs113301975 chr17:81869287 C>T
- Sequence
gaaggtcggtccggaccccagccc[C/T]agccccgcctccattccctggcca
- ASB in cell types
- HCT-116 (colon carcinoma) GM12891 (male B- cells lymphoblastoid cell line) ER+ breast tumor
- ASB for transcription factors
- SP2_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP2_HUMAN | -2.96 | 1.96 | 1.50 | -1.08 | Weak Discordant | |||
| ESR1_HUMAN | 1.28 | 3.11 | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid