rs113377631 chr3:196528902 G>A
- Sequence
ctccgcggggagctgggcggtggc[G/A]ggggccgcgggagtggagccggcc
- ASB in cell types
- HT1080 (fibrosarcoma) pancreas tibial artery COLO-829 (melanoma)
- ASB for transcription factors
- CTCF_HUMAN HIF1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.58 | 0.50 | 1.78 | n/a | No Hit | |||
| HIF1A_HUMAN | 1.99 | -1.84 | 4.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Mucosa, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood