rs113400508 chr1:26787988 A>C

Sequence
cgtgggccccggatggaggagctg[A/C]ggttcggtccccgccggggaggtc
ASB in cell types
K562 (myelogenous leukemia) HEK293 (embryonic kidney) primary B-CLL cells breast tumor
ASB for transcription factors
ESR1_HUMAN ZBT26_HUMAN BRD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 3.12 n/a 9.2·10-41.00 2.00 n/a No Hit
ZBT26_HUMAN 2.89 -5.22 0.011.00 2.00 n/a No Hit
BRD4_HUMAN 1.65 0.02 0.040.94 1.60 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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