rs113423551 chr2:46617108 G>T
- Sequence
taacagccagtcgcagaaagggag[G/T]ggcgggcaaaaggggcagcggctt
- ASB in cell types
- foreskin keratinocyte 22RV1 (prostate carcinoma)
- ASB for transcription factors
- PKNX1_HUMAN CREB1_HUMAN ANDR_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | -2.09 | 2.37 | 1.00 | 2.20 | Concordant | |||
| CREB1_HUMAN | 2.63 | -0.94 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.89 | -5.22 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.76 | 0.50 | 1.19 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid