rs113441120 chr1:52726440 T>C
- Sequence
cgcgggctcgcgcgcccgggcggg[T/C]cctcgcgggggcggagtctgcgct
- ASB in cell types
- BJ1-hTERT (Human fibroblast telomerase immortalized cell line) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- EGR1_HUMAN INT11_HUMAN ZFX_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | -0.16 | 1.75 | 1.20 | n/a | No Hit | |||
| INT11_HUMAN | 0.12 | 2.09 | 1.00 | n/a | n/a | |||
| ZFX_HUMAN | -0.36 | 1.02 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood